3D structure

PDB id
4V90 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
CGUAAC*GGAGAAG
Length
13 nucleotides
Bulged bases
4V90|1|BA|G|1699
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V90_133 not in the Motif Atlas
Geometric match to IL_7RQB_068
Geometric discrepancy: 0.1591
The information below is about IL_7RQB_068
Detailed Annotation
tSH-tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_65969.2
Basepair signature
cWW-tSH-tSH-tHH-tHS-cWW
Number of instances in this motif group
8

Unit IDs

4V90|1|BA|C|1686
4V90|1|BA|G|1687
4V90|1|BA|U|1688
4V90|1|BA|A|1689
4V90|1|BA|A|1690
4V90|1|BA|C|1691
*
4V90|1|BA|G|1696
4V90|1|BA|G|1697
4V90|1|BA|A|1698
4V90|1|BA|G|1699
4V90|1|BA|A|1700
4V90|1|BA|A|1701
4V90|1|BA|G|1702

Current chains

Chain BA
23S RIBOSOMAL RNA

Nearby chains

Chain AA
Small subunit ribosomal RNA; SSU rRNA
Chain BD
50S RIBOSOMAL PROTEIN L2

Coloring options:


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