IL_4V90_154

3D structure

PDB id

4V90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUGUAAAC*GGGAG

Length

13 nucleotides

Bulged bases

4V90|1|BA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V90_154 not in the Motif Atlas

Geometric match to IL_5G4T_002

Geometric discrepancy: 0.2956

The information below is about IL_5G4T_002

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4V90|1|BA|C|2129
4V90|1|BA|U|2130
4V90|1|BA|G|2131
4V90|1|BA|U|2132
4V90|1|BA|A|2133
4V90|1|BA|A|2134
4V90|1|BA|A|2135
4V90|1|BA|C|2136
*
4V90|1|BA|G|2155
4V90|1|BA|G|2156
4V90|1|BA|G|2157
4V90|1|BA|A|2158
4V90|1|BA|G|2159

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AG

30S RIBOSOMAL PROTEIN S7

Chain BC

RIBOSOMAL PROTEIN L1