IL_4V92_014

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

4V92|1|A2|U|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_014 not in the Motif Atlas

Geometric match to IL_4V88_397

Geometric discrepancy: 0.263

The information below is about IL_4V88_397

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4V92|1|A2|G|204
4V92|1|A2|U|205
4V92|1|A2|A|206
*
4V92|1|A2|U|259
4V92|1|A2|U|260
4V92|1|A2|U|261
4V92|1|A2|U|262
4V92|1|A2|C|263

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BG

ES6

Chain BI

ES8