3D structure

PDB id
4V92 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CCAAU*AG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V92_024 not in the Motif Atlas
Geometric match to IL_4LFB_015
Geometric discrepancy: 0.1863
The information below is about IL_4LFB_015
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_03109.3
Basepair signature
cWW-cWS-tWH-cWW-L
Number of instances in this motif group
6

Unit IDs

4V92|1|A2|C|443
4V92|1|A2|C|444
4V92|1|A2|A|445
4V92|1|A2|A|446
4V92|1|A2|U|447
*
4V92|1|A2|A|460
4V92|1|A2|G|461

Current chains

Chain A2
18S RRNA

Nearby chains

Chain BY
ES24

Coloring options:


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