IL_4V92_031

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

4V92|1|A2|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_031 not in the Motif Atlas

Homologous match to IL_4V88_414

Geometric discrepancy: 0.3869

The information below is about IL_4V88_414

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

4V92|1|A2|G|557
4V92|1|A2|U|558
4V92|1|A2|C|559
*
4V92|1|A2|G|586
4V92|1|A2|C|587

Current chains

Chain A2

18S RRNA

Nearby chains

Chain AZ

Cripavirus internal ribosome entry site (IRES); CrPV IRES

Chain BD

US3

Chain Be

ES30