IL_4V92_043

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_043 not in the Motif Atlas

Homologous match to IL_4V88_428

Geometric discrepancy: 0.224

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

4V92|1|A2|A|865
4V92|1|A2|G|866
*
4V92|1|A2|C|962
4V92|1|A2|A|963
4V92|1|A2|U|964
4V92|1|A2|U|965

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BH

ES7

Chain BL

US17

Chain BW

US8

Chain BX

US12