IL_4V92_044

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

4V92|1|A2|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_044 not in the Motif Atlas

Geometric match to IL_1YZ9_001

Geometric discrepancy: 0.2825

The information below is about IL_1YZ9_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V92|1|A2|G|868
4V92|1|A2|A|869
4V92|1|A2|C|870
*
4V92|1|A2|G|957
4V92|1|A2|U|958
4V92|1|A2|U|959
4V92|1|A2|U|960

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BH

ES7

Chain BN

US15

Chain BW

US8

Chain Bb

ES27