IL_4V92_049

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGAUC*GUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_049 not in the Motif Atlas

Geometric match to IL_4V88_435

Geometric discrepancy: 0.1578

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4V92|1|A2|G|985
4V92|1|A2|G|986
4V92|1|A2|G|987
4V92|1|A2|A|988
4V92|1|A2|U|989
4V92|1|A2|C|990
*
4V92|1|A2|G|1014
4V92|1|A2|U|1015
4V92|1|A2|C|1016

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BN

US15

Chain BO

US11

Chain Ba

ES26