IL_4V92_059

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCA*UGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCA,UGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_059 not in the Motif Atlas

Geometric match to IL_5UNE_007

Geometric discrepancy: 0.2488

The information below is about IL_5UNE_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V92|1|A2|C|1209
4V92|1|A2|C|1210
4V92|1|A2|A|1211
*
4V92|1|A2|U|1452
4V92|1|A2|G|1453
4V92|1|A2|G|1454

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BP

US19

Chain BS

US13