IL_4V92_064

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGCAUGG*UCUGUGAUGC

Length

18 nucleotides

Bulged bases

4V92|1|A2|C|1274, 4V92|1|A2|U|1432, 4V92|1|A2|G|1435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V92|1|A2|G|1271
4V92|1|A2|U|1272
4V92|1|A2|G|1273
4V92|1|A2|C|1274
4V92|1|A2|A|1275
4V92|1|A2|U|1276
4V92|1|A2|G|1277
4V92|1|A2|G|1278
*
4V92|1|A2|U|1430
4V92|1|A2|C|1431
4V92|1|A2|U|1432
4V92|1|A2|G|1433
4V92|1|A2|U|1434
4V92|1|A2|G|1435
4V92|1|A2|A|1436
4V92|1|A2|U|1437
4V92|1|A2|G|1438
4V92|1|A2|C|1439

Current chains

Chain A2

18S RRNA

Nearby chains

Chain AZ

Cripavirus internal ribosome entry site (IRES); CrPV IRES

Chain BD

US3

Chain BK

ES10

Chain BU

US10

Chain Bd

US14