IL_4V92_065

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_065 not in the Motif Atlas

Geometric match to IL_5J7L_061

Geometric discrepancy: 0.2329

The information below is about IL_5J7L_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V92|1|A2|G|1278
4V92|1|A2|C|1279
4V92|1|A2|C|1280
*
4V92|1|A2|G|1428
4V92|1|A2|G|1429
4V92|1|A2|U|1430

Current chains

Chain A2

18S RRNA

Nearby chains

Chain AZ

Cripavirus internal ribosome entry site (IRES); CrPV IRES

Chain BD

US3

Chain BU

US10

Chain Bd

US14