IL_4V92_069

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAC*GAG

Length

7 nucleotides

Bulged bases

4V92|1|A2|U|1340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_069 not in the Motif Atlas

Geometric match to IL_4V88_455

Geometric discrepancy: 0.3188

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V92|1|A2|C|1339
4V92|1|A2|U|1340
4V92|1|A2|A|1341
4V92|1|A2|C|1342
*
4V92|1|A2|G|1383
4V92|1|A2|A|1384
4V92|1|A2|G|1385

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BQ

US9

Chain BU

US10

Chain Bg

RACK1