IL_4V92_078

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGAUAG*CUUCAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_078 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.2375

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

4V92|1|A2|G|1540
4V92|1|A2|G|1541
4V92|1|A2|G|1542
4V92|1|A2|A|1543
4V92|1|A2|U|1544
4V92|1|A2|A|1545
4V92|1|A2|G|1546
*
4V92|1|A2|C|1565
4V92|1|A2|U|1566
4V92|1|A2|U|1567
4V92|1|A2|C|1568
4V92|1|A2|A|1569
4V92|1|A2|A|1570
4V92|1|A2|C|1571

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BF

US7

Chain BS

US13

Chain BT

ES19