IL_4V92_099

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AAA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AAA,UUU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V92_099 not in the Motif Atlas

Geometric match to IL_9AXU_025

Geometric discrepancy: 0.1856

The information below is about IL_9AXU_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4V92|1|AZ|A|6176
4V92|1|AZ|A|6177
4V92|1|AZ|A|6178
*
4V92|1|AZ|U|6198
4V92|1|AZ|U|6199
4V92|1|AZ|U|6200

Current chains

Chain AZ

RNA OF CRICKET-PARALYSIS-VIRUS-IRES

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA