IL_4V92_105

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUGCCAG*CGGUAAUUCC

Length

18 nucleotides

Bulged bases

4V92|1|A2|A|579, 4V92|1|A2|U|581, 4V92|1|A2|U|582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V92|1|A2|G|561
4V92|1|A2|G|562
4V92|1|A2|U|563
4V92|1|A2|G|564
4V92|1|A2|C|565
4V92|1|A2|C|566
4V92|1|A2|A|567
4V92|1|A2|G|568
*
4V92|1|A2|C|575
4V92|1|A2|G|576
4V92|1|A2|G|577
4V92|1|A2|U|578
4V92|1|A2|A|579
4V92|1|A2|A|580
4V92|1|A2|U|581
4V92|1|A2|U|582
4V92|1|A2|C|583
4V92|1|A2|C|584

Current chains

Chain A2

18S RRNA

Nearby chains

Chain AZ

Cripavirus internal ribosome entry site (IRES); CrPV IRES

Chain BD

US3

Chain BX

US12

Chain Be

ES30