IL_4V97_259

3D structure

PDB id

4V97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G299A.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases (A, C, G, U)

801G, 805G

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V97_259 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.0767

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.7

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V97|1|DA|G|674
4V97|1|DA|A|675
4V97|1|DA|A|676
4V97|1|DA|A|677
4V97|1|DA|C|678
*
4V97|1|DA|G|799
4V97|1|DA|A|800
4V97|1|DA|G|801
4V97|1|DA|A|802
4V97|1|DA|U|803
4V97|1|DA|A|804
4V97|1|DA|G|805
4V97|1|DA|C|806

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DF

50S RIBOSOMAL PROTEIN L4

Chain DP

50S RIBOSOMAL PROTEIN L15