3D structure

PDB id
4V97 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the bacterial ribosome ram mutation G299A.
Experimental method
X-RAY DIFFRACTION
Resolution
3.52 Å

Loop

Sequence
GCACU*AAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V97_270 not in the Motif Atlas
Homologous match to IL_7RQB_029
Geometric discrepancy: 0.0816
The information below is about IL_7RQB_029
Detailed Annotation
C-loop with bulged stacked A's
Broad Annotation
C-loop
Motif group
IL_02509.1
Basepair signature
cWW-tSW-cWS-cSH-tWH-R-R-cWW
Number of instances in this motif group
5

Unit IDs

4V97|1|DA|G|864
4V97|1|DA|C|865
4V97|1|DA|A|866
4V97|1|DA|C|867
4V97|1|DA|U|868
*
4V97|1|DA|A|909
4V97|1|DA|A|910
4V97|1|DA|A|911
4V97|1|DA|C|912

Current chains

Chain DA
23S rRNA

Nearby chains

Chain DB
5S ribosomal RNA; 5S rRNA
Chain DQ
50S RIBOSOMAL PROTEIN L16
Chain DZ
50S RIBOSOMAL PROTEIN L25

Coloring options:


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