IL_4V97_282

3D structure

PDB id

4V97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G299A.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

4V97|1|DA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V97_282 not in the Motif Atlas

Homologous match to IL_7RQB_042

Geometric discrepancy: 0.2107

The information below is about IL_7RQB_042

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.4

Basepair signature

cWW-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

4V97|1|DA|C|1043
4V97|1|DA|G|1044
4V97|1|DA|A|1045
4V97|1|DA|A|1046
4V97|1|DA|G|1047
4V97|1|DA|A|1048
4V97|1|DA|C|1049
4V97|1|DA|A|1050
4V97|1|DA|G|1051
*
4V97|1|DA|U|1108
4V97|1|DA|C|1109
4V97|1|DA|G|1110
4V97|1|DA|A|1111
4V97|1|DA|G|1112

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DH

50S RIBOSOMAL PROTEIN L6