IL_4V97_301

3D structure

PDB id

4V97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G299A.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V97_301 not in the Motif Atlas

Homologous match to IL_5J7L_304

Geometric discrepancy: 0.0723

The information below is about IL_5J7L_304

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.3

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4V97|1|DA|G|1651
4V97|1|DA|A|1652
4V97|1|DA|G|1653
4V97|1|DA|A|1654
4V97|1|DA|A|1655
4V97|1|DA|C|1656
*
4V97|1|DA|G|2004
4V97|1|DA|A|2005
4V97|1|DA|C|2006

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DE

50S RIBOSOMAL PROTEIN L3

Chain DR

50S RIBOSOMAL PROTEIN L17