IL_4V9B_039

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAU*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9B_039 not in the Motif Atlas

Geometric match to IL_4V88_444

Geometric discrepancy: 0.1785

The information below is about IL_4V88_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V9B|1|AA|C|948
4V9B|1|AA|A|949
4V9B|1|AA|U|950
*
4V9B|1|AA|G|1231
4V9B|1|AA|U|1232
4V9B|1|AA|G|1233

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

Transfer RNA; tRNA

Chain AL

30S RIBOSOMAL PROTEIN S9

Chain AP

30S RIBOSOMAL PROTEIN S13