IL_4V9B_150

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

4V9B|1|BA|G|2112

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9B_150 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.2392

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

4V9B|1|BA|G|2110
4V9B|1|BA|C|2111
4V9B|1|BA|G|2112
4V9B|1|BA|U|2113
4V9B|1|BA|A|2114
4V9B|1|BA|G|2115
4V9B|1|BA|G|2116
4V9B|1|BA|A|2117
4V9B|1|BA|U|2118
4V9B|1|BA|A|2119
4V9B|1|BA|G|2120
*
4V9B|1|BA|C|2178
4V9B|1|BA|C|2179

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AD

Transfer RNA; tRNA