IL_4V9B_210

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUC*GAUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9B_210 not in the Motif Atlas

Geometric match to IL_6CK5_002

Geometric discrepancy: 0.3392

The information below is about IL_6CK5_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_70784.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

4V9B|1|CA|G|597
4V9B|1|CA|U|598
4V9B|1|CA|C|599
*
4V9B|1|CA|G|639
4V9B|1|CA|A|640
4V9B|1|CA|U|641
4V9B|1|CA|A|642
4V9B|1|CA|C|643

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CK

30S RIBOSOMAL PROTEIN S8

Chain CT

30S RIBOSOMAL PROTEIN S17