IL_4V9B_225

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9B_225 not in the Motif Atlas

Homologous match to IL_4LFB_039

Geometric discrepancy: 0.1923

The information below is about IL_4LFB_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4V9B|1|CA|G|993
4V9B|1|CA|A|994
4V9B|1|CA|C|995
4V9B|1|CA|A|996
4V9B|1|CA|U|997
*
4V9B|1|CA|A|1044
4V9B|1|CA|C|1045

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CQ

30S RIBOSOMAL PROTEIN S14