IL_4V9B_234

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUGCCAGC*GGGCACUC

Length

17 nucleotides

Bulged bases

4V9B|1|CA|U|1125, 4V9B|1|CA|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9B|1|CA|G|1124
4V9B|1|CA|U|1125
4V9B|1|CA|U|1126
4V9B|1|CA|G|1127
4V9B|1|CA|C|1128
4V9B|1|CA|C|1129
4V9B|1|CA|A|1130
4V9B|1|CA|G|1131
4V9B|1|CA|C|1132
*
4V9B|1|CA|G|1142
4V9B|1|CA|G|1143
4V9B|1|CA|G|1144
4V9B|1|CA|C|1145
4V9B|1|CA|A|1146
4V9B|1|CA|C|1147
4V9B|1|CA|U|1148
4V9B|1|CA|C|1149

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CL

30S RIBOSOMAL PROTEIN S9

Chain CM

30S RIBOSOMAL PROTEIN S10