IL_4V9B_360

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGG*CCAG

Length

7 nucleotides

Bulged bases

4V9B|1|DB|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9B_360 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.3333

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

4V9B|1|DB|C|17
4V9B|1|DB|G|18
4V9B|1|DB|G|19
*
4V9B|1|DB|C|64
4V9B|1|DB|C|65
4V9B|1|DB|A|66
4V9B|1|DB|G|67

Current chains

Chain DB

5S RIBOSOMAL RNA

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DQ

50S ribosomal protein L18

Chain DV

50S ribosomal protein L25