IL_4V9B_375

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGG*CUAC

Length

7 nucleotides

Bulged bases

4V9B|1|BA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9B_375 not in the Motif Atlas

Geometric match to IL_5M0H_001

Geometric discrepancy: 0.343

The information below is about IL_5M0H_001

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V9B|1|BA|G|880
4V9B|1|BA|G|881
4V9B|1|BA|G|882
*
4V9B|1|BA|C|894
4V9B|1|BA|U|895
4V9B|1|BA|A|896
4V9B|1|BA|C|897

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BP

50S ribosomal protein L16

Chain BV

50S ribosomal protein L25