IL_4V9B_379
3D structure
- PDB id
- 4V9B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of the 70S ribosome with tigecycline.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGGUCC*GGCCA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9B_379 not in the Motif Atlas
- Geometric match to IL_7VYX_008
- Geometric discrepancy: 0.3977
- The information below is about IL_7VYX_008
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.1
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
4V9B|1|BA|U|2398
4V9B|1|BA|G|2399
4V9B|1|BA|G|2400
4V9B|1|BA|U|2401
4V9B|1|BA|C|2402
4V9B|1|BA|C|2403
*
4V9B|1|BA|G|2414
4V9B|1|BA|G|2415
4V9B|1|BA|C|2416
4V9B|1|BA|C|2417
4V9B|1|BA|A|2418
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B6
- 50S ribosomal protein L33
- Chain B8
- 50S ribosomal protein L35
- Chain BO
- 50S ribosomal protein L15
- Chain BZ
- 50S ribosomal protein L28
Coloring options: