Loop IL_4V9B

3D structure

PDB id: 4V9B (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal Structure of the 70S ribosome with tigecycline.
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å

Loop

Sequence: GCCAGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAGUG*CUCACUGGU
Length: 50 nucleotides
Bulged bases: 4V9B|1|DA|A|1057, 4V9B|1|DA|G|1062, 4V9B|1|DA|U|1083, 4V9B|1|DA|A|1088
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V9B|1|DA|G|1051
4V9B|1|DA|C|1052
4V9B|1|DA|C|1053
4V9B|1|DA|A|1054
4V9B|1|DA|G|1055
4V9B|1|DA|G|1056
4V9B|1|DA|A|1057
4V9B|1|DA|U|1058
4V9B|1|DA|G|1059
4V9B|1|DA|U|1060
4V9B|1|DA|U|1061
4V9B|1|DA|G|1062
4V9B|1|DA|G|1063
4V9B|1|DA|C|1064
4V9B|1|DA|U|1065
4V9B|1|DA|U|1066
4V9B|1|DA|A|1067
4V9B|1|DA|G|1068
4V9B|1|DA|A|1069
4V9B|1|DA|A|1070
4V9B|1|DA|G|1071
4V9B|1|DA|C|1072
4V9B|1|DA|A|1073
4V9B|1|DA|G|1074
4V9B|1|DA|C|1075
4V9B|1|DA|C|1076
4V9B|1|DA|A|1077
4V9B|1|DA|U|1078
4V9B|1|DA|C|1079
4V9B|1|DA|A|1080
4V9B|1|DA|U|1081
4V9B|1|DA|U|1082
4V9B|1|DA|U|1083
4V9B|1|DA|A|1084
4V9B|1|DA|A|1085
4V9B|1|DA|A|1086
4V9B|1|DA|G|1087
4V9B|1|DA|A|1088
4V9B|1|DA|G|1089
4V9B|1|DA|U|1090
4V9B|1|DA|G|1091
*
4V9B|1|DA|C|1100
4V9B|1|DA|U|1101
4V9B|1|DA|C|1102
4V9B|1|DA|A|1103
4V9B|1|DA|C|1104
4V9B|1|DA|U|1105
4V9B|1|DA|G|1106
4V9B|1|DA|G|1107
4V9B|1|DA|U|1108

Current chains

Chain DA: 23S ribosomal RNA

Nearby chains

Chain DH: 50S ribosomal protein L6

IL_4V9B_394