IL_4V9B_396

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGGGAGCCUGUGAAC*GGGAGGCGCCGGUGAAAUACCA

Length

37 nucleotides

Bulged bases

4V9B|1|DA|A|2126, 4V9B|1|DA|U|2132, 4V9B|1|DA|U|2167, 4V9B|1|DA|G|2168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9B|1|DA|U|2122
4V9B|1|DA|G|2123
4V9B|1|DA|G|2124
4V9B|1|DA|G|2125
4V9B|1|DA|A|2126
4V9B|1|DA|G|2127
4V9B|1|DA|C|2128
4V9B|1|DA|C|2129
4V9B|1|DA|U|2130
4V9B|1|DA|G|2131
4V9B|1|DA|U|2132
4V9B|1|DA|G|2133
4V9B|1|DA|A|2134
4V9B|1|DA|A|2135
4V9B|1|DA|C|2136
*
4V9B|1|DA|G|2155
4V9B|1|DA|G|2156
4V9B|1|DA|G|2157
4V9B|1|DA|A|2158
4V9B|1|DA|G|2159
4V9B|1|DA|G|2160
4V9B|1|DA|C|2161
4V9B|1|DA|G|2162
4V9B|1|DA|C|2163
4V9B|1|DA|C|2164
4V9B|1|DA|G|2165
4V9B|1|DA|G|2166
4V9B|1|DA|U|2167
4V9B|1|DA|G|2168
4V9B|1|DA|A|2169
4V9B|1|DA|A|2170
4V9B|1|DA|A|2171
4V9B|1|DA|U|2172
4V9B|1|DA|A|2173
4V9B|1|DA|C|2174
4V9B|1|DA|C|2175
4V9B|1|DA|A|2176

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain CD

Transfer RNA; tRNA