IL_4V9D_040

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_040 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.0868

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4V9D|1|AA|C|779
4V9D|1|AA|A|780
4V9D|1|AA|A|781
4V9D|1|AA|A|782
4V9D|1|AA|C|783
*
4V9D|1|AA|G|799
4V9D|1|AA|G|800
4V9D|1|AA|U|801
4V9D|1|AA|A|802
4V9D|1|AA|G|803

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain AU

30S ribosomal protein S21

Chain CA

Large subunit ribosomal RNA; LSU rRNA