IL_4V9D_043

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

4V9D|1|AA|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_043 not in the Motif Atlas

Homologous match to IL_6CZR_148

Geometric discrepancy: 0.1274

The information below is about IL_6CZR_148

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

52

Unit IDs

4V9D|1|AA|G|925
4V9D|1|AA|G|926
4V9D|1|AA|G|927
*
4V9D|1|AA|U|1390
4V9D|1|AA|U|1391

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AX

messenger RNA