IL_4V9D_096

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_096 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1234

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V9D|1|BA|U|409
4V9D|1|BA|G|410
4V9D|1|BA|A|411
4V9D|1|BA|A|412
4V9D|1|BA|G|413
4V9D|1|BA|A|414
4V9D|1|BA|A|415
4V9D|1|BA|G|416
*
4V9D|1|BA|U|427
4V9D|1|BA|G|428
4V9D|1|BA|U|429
4V9D|1|BA|A|430
4V9D|1|BA|A|431
4V9D|1|BA|A|432
4V9D|1|BA|G|433

Current chains

Chain BA

16S rRNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain BD

30S ribosomal protein S4