IL_4V9D_103

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGCAG*UCAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_103 not in the Motif Atlas

Homologous match to IL_5J7L_027

Geometric discrepancy: 0.0861

The information below is about IL_5J7L_027

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4V9D|1|BA|C|580
4V9D|1|BA|G|581
4V9D|1|BA|C|582
4V9D|1|BA|A|583
4V9D|1|BA|G|584
*
4V9D|1|BA|U|757
4V9D|1|BA|C|758
4V9D|1|BA|A|759
4V9D|1|BA|G|760
4V9D|1|BA|G|761

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BH

30S ribosomal protein S8

Chain BL

30S ribosomal protein S12

Chain BO

30S ribosomal protein S15

Chain BQ

30S ribosomal protein S17