IL_4V9D_138

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_138 not in the Motif Atlas

Geometric match to IL_3GM7_004

Geometric discrepancy: 0.1546

The information below is about IL_3GM7_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V9D|1|BA|G|1405
4V9D|1|BA|U|1406
4V9D|1|BA|C|1407
*
4V9D|1|BA|G|1494
4V9D|1|BA|U|1495
4V9D|1|BA|C|1496

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BX

messenger RNA

Chain DA

Large subunit ribosomal RNA; LSU rRNA