IL_4V9D_188

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

4V9D|1|CA|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_188 not in the Motif Atlas

Geometric match to IL_5TBW_056

Geometric discrepancy: 0.385

The information below is about IL_5TBW_056

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4V9D|1|CA|G|1087
4V9D|1|CA|A|1088
4V9D|1|CA|A|1089
4V9D|1|CA|A|1090
4V9D|1|CA|G|1091
*
4V9D|1|CA|C|1100
4V9D|1|CA|U|1101
4V9D|1|CA|C|1102

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C4

50S ribosomal protein L36

Chain CI

50S ribosomal protein L11