IL_4V9D_206

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUUC*GAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UUUC,GAAA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_206 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.2122

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

4V9D|1|CA|U|1485
4V9D|1|CA|U|1486
4V9D|1|CA|U|1487
4V9D|1|CA|C|1488
*
4V9D|1|CA|G|1501
4V9D|1|CA|A|1502
4V9D|1|CA|A|1503
4V9D|1|CA|A|1504

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CC

50S ribosomal protein L2