IL_4V9D_221

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGC*GUAAA

Length

8 nucleotides

Bulged bases

4V9D|1|CA|A|1900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_221 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.2511

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

4V9D|1|CA|U|1841
4V9D|1|CA|G|1842
4V9D|1|CA|C|1843
*
4V9D|1|CA|G|1897
4V9D|1|CA|U|1898
4V9D|1|CA|A|1899
4V9D|1|CA|A|1900
4V9D|1|CA|A|1901

Current chains

Chain CA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain CC

50S ribosomal protein L2