IL_4V9D_221
3D structure
- PDB id
- 4V9D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of the bacterial ribosome in classical and hybrid states of tRNA binding
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UGC*GUAAA
- Length
- 8 nucleotides
- Bulged bases
- 4V9D|1|CA|A|1900
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9D_221 not in the Motif Atlas
- Geometric match to IL_4V9F_097
- Geometric discrepancy: 0.2511
- The information below is about IL_4V9F_097
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_68118.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 28
Unit IDs
4V9D|1|CA|U|1841
4V9D|1|CA|G|1842
4V9D|1|CA|C|1843
*
4V9D|1|CA|G|1897
4V9D|1|CA|U|1898
4V9D|1|CA|A|1899
4V9D|1|CA|A|1900
4V9D|1|CA|A|1901
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CC
- 50S ribosomal protein L2
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