3D structure

PDB id
4V9D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structures of the bacterial ribosome in classical and hybrid states of tRNA binding
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UGC*GUAAA
Length
8 nucleotides
Bulged bases
4V9D|1|CA|A|1900
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V9D_221 not in the Motif Atlas
Geometric match to IL_4V9F_097
Geometric discrepancy: 0.2511
The information below is about IL_4V9F_097
Detailed Annotation
Isolated non-canonical cWW with bulges
Broad Annotation
Isolated non-canonical cWW with bulges
Motif group
IL_68118.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
28

Unit IDs

4V9D|1|CA|U|1841
4V9D|1|CA|G|1842
4V9D|1|CA|C|1843
*
4V9D|1|CA|G|1897
4V9D|1|CA|U|1898
4V9D|1|CA|A|1899
4V9D|1|CA|A|1900
4V9D|1|CA|A|1901

Current chains

Chain CA
23S rRNA

Nearby chains

Chain AA
Small subunit ribosomal RNA; SSU rRNA
Chain CC
50S ribosomal protein L2

Coloring options:


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