IL_4V9D_238

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_238 not in the Motif Atlas

Geometric match to IL_5MWI_008

Geometric discrepancy: 0.297

The information below is about IL_5MWI_008

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

4V9D|1|CA|U|2139
4V9D|1|CA|G|2140
4V9D|1|CA|G|2141
*
4V9D|1|CA|C|2150
4V9D|1|CA|U|2151
4V9D|1|CA|G|2152

Current chains

Chain CA

23S rRNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain BA

Small subunit ribosomal RNA; SSU rRNA