IL_4V9D_239

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAC,GUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_239 not in the Motif Atlas

Geometric match to IL_7RQB_030

Geometric discrepancy: 0.2872

The information below is about IL_7RQB_030

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4V9D|1|CA|G|2141
4V9D|1|CA|A|2142
4V9D|1|CA|C|2143
*
4V9D|1|CA|G|2148
4V9D|1|CA|U|2149
4V9D|1|CA|C|2150

Current chains

Chain CA

23S rRNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AK

30S ribosomal protein S11

Chain BA

Small subunit ribosomal RNA; SSU rRNA