IL_4V9D_240

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUG*UG

Length

5 nucleotides

Bulged bases

4V9D|1|CA|U|2203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_240 not in the Motif Atlas

Homologous match to IL_5J7L_331

Geometric discrepancy: 0.1213

The information below is about IL_5J7L_331

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

4V9D|1|CA|U|2202
4V9D|1|CA|U|2203
4V9D|1|CA|G|2204
*
4V9D|1|CA|U|2220
4V9D|1|CA|G|2221

Current chains

Chain CA

23S rRNA

Nearby chains

Chain BD

30S ribosomal protein S4

Chain CC

50S ribosomal protein L2

Chain CX

50S ribosomal protein L28