IL_4V9D_303

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_303 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.1879

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V9D|1|DA|G|875
4V9D|1|DA|C|876
4V9D|1|DA|A|877
4V9D|1|DA|A|878
4V9D|1|DA|G|879
*
4V9D|1|DA|C|898
4V9D|1|DA|A|899
4V9D|1|DA|A|900
4V9D|1|DA|C|901
4V9D|1|DA|C|902

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DM

50S ribosomal protein L16