IL_4V9D_339

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CAC,GUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_339 not in the Motif Atlas

Geometric match to IL_4P43_001

Geometric discrepancy: 0.2384

The information below is about IL_4P43_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V9D|1|DA|C|1531
4V9D|1|DA|A|1532
4V9D|1|DA|C|1533
*
4V9D|1|DA|G|1538
4V9D|1|DA|U|1539
4V9D|1|DA|G|1540

Current chains

Chain DA

23S rRNA

Nearby chains