IL_4V9D_344

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4V9D|1|DA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_344 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.0657

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4V9D|1|DA|C|1686
4V9D|1|DA|G|1687
4V9D|1|DA|U|1688
4V9D|1|DA|A|1689
4V9D|1|DA|A|1690
4V9D|1|DA|C|1691
*
4V9D|1|DA|G|1696
4V9D|1|DA|G|1697
4V9D|1|DA|A|1698
4V9D|1|DA|G|1699
4V9D|1|DA|A|1700
4V9D|1|DA|A|1701
4V9D|1|DA|G|1702

Current chains

Chain DA

23S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain DC

50S ribosomal protein L2