IL_4V9D_362

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGA*UUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_362 not in the Motif Atlas

Geometric match to IL_4P43_004

Geometric discrepancy: 0.1997

The information below is about IL_4P43_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V9D|1|DA|U|2106
4V9D|1|DA|G|2107
4V9D|1|DA|A|2108
*
4V9D|1|DA|U|2181
4V9D|1|DA|U|2182
4V9D|1|DA|A|2183

Current chains

Chain DA

23S rRNA

Nearby chains