IL_4V9D_366

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4V9D|1|DA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_366 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.3712

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4V9D|1|DA|C|2129
4V9D|1|DA|U|2130
4V9D|1|DA|U|2131
4V9D|1|DA|U|2132
4V9D|1|DA|G|2133
4V9D|1|DA|A|2134
4V9D|1|DA|A|2135
4V9D|1|DA|G|2136
*
4V9D|1|DA|U|2155
4V9D|1|DA|G|2156
4V9D|1|DA|G|2157
4V9D|1|DA|A|2158
4V9D|1|DA|G|2159

Current chains

Chain DA

23S rRNA

Nearby chains