IL_4V9D_388

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCU*AAGG

Length

7 nucleotides

Bulged bases

4V9D|1|DA|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_388 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.2052

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V9D|1|DA|C|2794
4V9D|1|DA|C|2795
4V9D|1|DA|U|2796
*
4V9D|1|DA|A|2799
4V9D|1|DA|A|2800
4V9D|1|DA|G|2801
4V9D|1|DA|G|2802

Current chains

Chain DA

23S rRNA

Nearby chains