IL_4V9D_391

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

4V9D|1|DA|A|2873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_391 not in the Motif Atlas

Homologous match to IL_5J7L_353

Geometric discrepancy: 0.0782

The information below is about IL_5J7L_353

Detailed Annotation

Multiple bulged bases with non-canonical cWW

Broad Annotation

Multiple bulged bases with non-canonical cWW

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

4V9D|1|DA|G|2843
4V9D|1|DA|G|2844
4V9D|1|DA|U|2845
4V9D|1|DA|G|2846
*
4V9D|1|DA|C|2870
4V9D|1|DA|U|2871
4V9D|1|DA|A|2872
4V9D|1|DA|A|2873
4V9D|1|DA|C|2874

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DD

50S ribosomal protein L3

Chain DN

50S ribosomal protein L17

Chain DP

50S ribosomal protein L19