IL_4V9D_394

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUCCCA*UGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_394 not in the Motif Atlas

Geometric match to IL_9E6Q_106

Geometric discrepancy: 0.221

The information below is about IL_9E6Q_106

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41504.1

Basepair signature

cWW-tSH-L-R-L-tHH-cWW

Number of instances in this motif group

5

Unit IDs

4V9D|1|DB|G|23
4V9D|1|DB|G|24
4V9D|1|DB|U|25
4V9D|1|DB|C|26
4V9D|1|DB|C|27
4V9D|1|DB|C|28
4V9D|1|DB|A|29
*
4V9D|1|DB|U|55
4V9D|1|DB|G|56
4V9D|1|DB|A|57
4V9D|1|DB|A|58
4V9D|1|DB|A|59
4V9D|1|DB|C|60

Current chains

Chain DB

5S rRNA

Nearby chains

Chain DF

50S ribosomal protein L5

Chain DO

50S ribosomal protein L18