IL_4V9D_410

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

4V9D|1|CA|U|846, 4V9D|1|CA|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_410 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.1135

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

4V9D|1|CA|A|844
4V9D|1|CA|A|845
4V9D|1|CA|U|846
4V9D|1|CA|U|847
4V9D|1|CA|C|848
*
4V9D|1|CA|G|930
4V9D|1|CA|U|931
4V9D|1|CA|U|932
4V9D|1|CA|A|933
4V9D|1|CA|U|934

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CZ

50S ribosomal protein L30