IL_4V9D_417

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACGUGCUAAUCUGCGAUAAGC*GAUUU

Length

26 nucleotides

Bulged bases

4V9D|1|DA|C|61, 4V9D|1|DA|U|72

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9D|1|DA|A|56
4V9D|1|DA|C|57
4V9D|1|DA|G|58
4V9D|1|DA|U|59
4V9D|1|DA|G|60
4V9D|1|DA|C|61
4V9D|1|DA|U|62
4V9D|1|DA|A|63
4V9D|1|DA|A|64
4V9D|1|DA|U|65
4V9D|1|DA|C|66
4V9D|1|DA|U|67
4V9D|1|DA|G|68
4V9D|1|DA|C|69
4V9D|1|DA|G|70
4V9D|1|DA|A|71
4V9D|1|DA|U|72
4V9D|1|DA|A|73
4V9D|1|DA|A|74
4V9D|1|DA|G|75
4V9D|1|DA|C|76
*
4V9D|1|DA|G|110
4V9D|1|DA|A|111
4V9D|1|DA|U|112
4V9D|1|DA|U|113
4V9D|1|DA|U|114

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34

Chain DT

50S ribosomal protein L23

Chain DY

50S ribosomal protein L29